2022
INDENT: Incremental Online Decision Tree Training for Domain-Specific Systems-on-Chip Proceedings Article
In: Proceedings of the 41st IEEE/ACM International Conference on Computer-Aided Design (ICCAD), pp. 1-9, 2022.
Quarantine in Motion: a Graph Learning Framework to Reduce Disease Transmission without Lockdown Proceedings Article
In: Proceedings of the 2022 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2022), 2022.
2021
Pruning Digital Contact Networks for Meso-scale Epidemics Surveillance Using Foursquare Data Proceedings Article
In: ACM/IEEE Intl. Conf. on Advances in Social Network Analysis and Mining (ASONAM), 2021.
2020
On network science and mutual information for explaining deep neural networks Proceedings Article
In: ICASSP 2020-2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 8399–8403, IEEE 2020.
Centralized and decentralized isolation strategies and their impact on the COVID-19 pandemic dynamics Journal Article
In: arXiv preprint arXiv:2004.04222, 2020.
2019
MetaNN: accurate classification of host phenotypes from metagenomic data using neural networks Journal Article
In: Bmc Bioinformatics, vol. 20, no. 12, pp. 314, 2019.
NIF: A Framework for Quantifying Neural Information Flow in Deep Networks Proceedings Article
In: Workshop on Network Interpretability for Deep Learning@ AAAI Conf. on Artificial Intelligence (AAAI), Honolulu, 2019.
Bot Detection in Reddit Political Discussion Proceedings Article
In: Proceedings of the Fourth International Workshop on Social Sensing, pp. 30–35, 2019.
Memory-and communication-aware model compression for distributed deep learning inference on iot Journal Article
In: ACM Transactions on Embedded Computing Systems (TECS), vol. 18, no. 5s, pp. 1–22, 2019.
2018
Dimensionality reduction via community detection in small sample datasets Proceedings Article
In: Pacific-Asia Conference on Knowledge Discovery and Data Mining, pp. 102–114, Springer, Cham 2018.
Weighted betweenness preferential attachment: A new mechanism explaining social network formation and evolution Journal Article
In: Scientific reports, vol. 8, no. 1, pp. 1–14, 2018.
PGLasso: Microbial Community Detection through Phylogenetic Graphical Lasso Journal Article
In: arXiv preprint arXiv:1807.08039, 2018.
Computational Approaches for Incorporating Short-and Long-Term Dynamics in Smart Water Networks Book Section
In: Smart Water Grids, pp. 297–323, CRC Press, 2018.
Modeling computational, sensing, and actuation surfaces Journal Article
In: Low-Power Processors and Systems on Chips, pp. 16–1, 2018.
A Dynamic Network and Representation LearningApproach for Quantifying Economic Growth fromSatellite Imagery Journal Article
In: arXiv preprint arXiv:1812.00141, 2018.
Climate Anomalies vs Air Pollution: Carbon Emissions and Anomaly Networks Journal Article
In: arXiv preprint arXiv:1812.02634, 2018.
2017
Towards cell-based therapeutics: A bio-inspired autonomous drug delivery system Journal Article
In: Nano communication networks, vol. 12, pp. 25–33, 2017.
Enhancing precipitation models by capturing multivariate and multiscale climate dynamics Proceedings Article
In: Proceedings of the 3rd International Workshop on Cyber-Physical Systems for Smart Water Networks, pp. 39–42, 2017.
K-hop learning: a network-based feature extraction for improved river flow prediction Proceedings Article
In: Proceedings of the 3rd International Workshop on Cyber-Physical Systems for Smart Water Networks, pp. 15–18, 2017.
From ideas to social signals: Spatiotemporal analysis of social media dynamics Proceedings Article
In: Proceedings of the 2nd International Workshop on Social Sensing, pp. 29–34, 2017.
Non-Stationary Bayesian Learning for Global Sustainability Journal Article
In: IEEE Transactions on Sustainable Computing, vol. 2, no. 3, pp. 304–316, 2017.
Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated serratia marcescens Journal Article
In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 473, no. 2203, pp. 20170154, 2017.
Inferring microbial interactions from metagenomic time-series using prior biological knowledge Proceedings Article
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, pp. 168–177, 2017.
Molecular communication with DNA cellular storage system Proceedings Article
In: Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2017.
Discovering Hidden Knowledge in Carbon Emissions Data: A Multilayer Network Approach Proceedings Article
In: International Conference on Discovery Science, pp. 223–238, Springer, Cham 2017.
MPLasso: Inferring microbial association networks using prior microbial knowledge Journal Article
In: PLoS computational biology, vol. 13, no. 12, pp. e1005915, 2017.
2016
Autonomous and adaptive control of populations of bacteria through environment regulation Proceedings Article
In: International Conference on Computational Methods in Systems Biology, pp. 168–185, Springer, Cham 2016.
An autonomous and adaptive bacteria-based drug delivery system Proceedings Article
In: Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2016.
In Silico Evaluation of the Impacts of Quorum Sensing Inhibition (QSI) on strain competition and development of QSI resistance Journal Article
In: Scientific reports, vol. 6, pp. 35136, 2016.
Tolerance-based interaction: A new model targeting opinion formation and diffusion in social networks Journal Article
In: PeerJ Computer Science, vol. 2, pp. e42, 2016.
Data-Driven Engineering of Social Dynamics: Pattern Matching and Profit Maximization Journal Article
In: PloS one, vol. 11, no. 1, pp. e0146490, 2016.
2015
Network-based modeling and analysis of cloud fraction and precipitation: A case study for the ohio river basin Proceedings Article
In: Proceedings of the 1st ACM International Workshop on Cyber-Physical Systems for Smart Water Networks, pp. 1–6, 2015.
Molecular tweeting: unveiling the social network behind heterogeneous bacteria populations Proceedings Article
In: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, pp. 366–375, 2015.
Towards autonomous control of molecular communication in populations of bacteria Proceedings Article
In: Proceedings of the Second Annual International Conference on Nanoscale Computing and Communication, pp. 1–6, 2015.
Multi-scale compositionality: identifying the compositional structures of social dynamics using deep learning Journal Article
In: PloS one, vol. 10, no. 4, pp. e0118309, 2015.
2014
Heterogeneous structure of stem cells dynamics: statistical models and quantitative predictions Journal Article
In: Scientific reports, vol. 4, pp. 4826, 2014.
Analytical modeling and experimental characterization of chemotaxis in serratia marcescens Journal Article
In: Physical Review E, vol. 89, no. 5, pp. 52704, 2014.
Don't Let History Repeat Itself: Optimal Multidrug Quorum Quenching of Pathogens Network Proceedings Article
In: Proceedings of ACM The First Annual International Conference on Nanoscale Computing and Communication, pp. 1–9, 2014.
Miniature devices in the wild: Modeling molecular communication in complex extracellular spaces Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 32, no. 12, pp. 2344–2353, 2014.
2013
Identifying dynamics and collective behaviors in microblogging traces Proceedings Article
In: Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, pp. 846–853, 2013.
Bumpy rides: Modeling the dynamics of chemotactic interacting bacteria Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 31, no. 12, pp. 879–890, 2013.
Efficient modeling and simulation of bacteria-based nanonetworks with BNSim Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 31, no. 12, pp. 868–878, 2013.
2012
Modeling populations of micro-robots for biological applications Proceedings Article
In: 2012 IEEE International Conference on Communications (ICC), pp. 6188–6192, IEEE 2012.
2011
A fractional calculus approach to modeling fractal dynamic games Proceedings Article
In: 2011 50th IEEE Conference on Decision and Control and European Control Conference, pp. 255–260, IEEE 2011.
Exploring congestion phase transitions in vehicular traffic via topology and driver behavior modeling Proceedings Article
In: 2011 IEEE Forum on Integrated and Sustainable Transportation Systems, pp. 115–121, IEEE 2011.
2010
On-chip networks: Two sides of the same coin Journal Article
In: IEEE Annals of the History of Computing, vol. 27, no. 4, pp. 80–80, 2010.
2008
The Chip Is the Network Miscellaneous
2008.
2007
Fresh air: the emerging landscape of design for networked embedded systems Proceedings Article
In: Proceedings of the 5th IEEE/ACM international conference on Hardware/software codesign and system synthesis, pp. 124–124, 2007.
2006
Is “Network” the Next “Big Idea” in Design? Proceedings Article
In: Proceedings of the Design Automation & Test in Europe Conference, pp. 1–3, IEEE 2006.
2005
Communication and task scheduling of application-specific networks-on-chip Journal Article
In: IEE Proceedings-Computers and Digital Techniques, vol. 152, no. 5, pp. 643–651, 2005.