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2019

19.

Lo, Chieh; Marculescu, Radu

MetaNN: accurate classification of host phenotypes from metagenomic data using neural networks Journal Article

In: Bmc Bioinformatics, 20 (12), pp. 314, 2019.

Links | BibTeX | Tags: Biological Networks, Networks

2018

18.

Lo, Chieh; Marculescu, Radu

PGLasso: Microbial Community Detection through Phylogenetic Graphical Lasso Journal Article

In: arXiv preprint arXiv:1807.08039, 2018.

Links | BibTeX | Tags: Biological Networks, Networks

2017

17.

Lo, Chieh; Bhardwaj, Kartikeya; Marculescu, Radu

Towards cell-based therapeutics: A bio-inspired autonomous drug delivery system Journal Article

In: Nano communication networks, 12 , pp. 25–33, 2017.

Links | BibTeX | Tags: Biological Networks, Networks

16.

Koorehdavoudi, Hana; Bogdan, Paul; Wei, Guopeng; Marculescu, Radu; Zhuang, Jiang; Carlsen, Rika Wright; Sitti, Metin

Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated serratia marcescens Journal Article

In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 473 (2203), pp. 20170154, 2017.

Links | BibTeX | Tags: Biological Networks, Networks

15.

Lo, Chieh; Marculescu, Radu

Inferring microbial interactions from metagenomic time-series using prior biological knowledge Inproceedings

In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, pp. 168–177, 2017.

Links | BibTeX | Tags: Biological Networks, Networks

14.

Shah, Sohil; Raghavachari, Ashwin; Lo, Chieh; Marculescu, Radu

Molecular communication with DNA cellular storage system Inproceedings

In: Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2017.

Links | BibTeX | Tags: Biological Networks, Networks

13.

Lo, Chieh; Marculescu, Radu

MPLasso: Inferring microbial association networks using prior microbial knowledge Journal Article

In: PLoS computational biology, 13 (12), pp. e1005915, 2017.

Links | BibTeX | Tags: Biological Networks, Networks

2016

12.

Lo, Chieh; Marculescu, Radu

Autonomous and adaptive control of populations of bacteria through environment regulation Inproceedings

In: International Conference on Computational Methods in Systems Biology, pp. 168–185, Springer, Cham 2016.

Links | BibTeX | Tags: Biological Networks, Networks

11.

Lo, Chieh; Bhardwaj, Kartikeya; Marculescu, Radu

An autonomous and adaptive bacteria-based drug delivery system Inproceedings

In: Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2016.

Links | BibTeX | Tags: Biological Networks, Networks

10.

Wei, Guopeng; Lo, Chieh; Walsh, Connor; Hiller, Luisa N; Marculescu, Radu

In Silico Evaluation of the Impacts of Quorum Sensing Inhibition (QSI) on strain competition and development of QSI resistance Journal Article

In: Scientific reports, 6 , pp. 35136, 2016.

Links | BibTeX | Tags: Biological Networks, Networks

2015

9.

Wei, Guopeng; Walsh, Connor; Cazan, Irina; Marculescu, Radu

Molecular tweeting: unveiling the social network behind heterogeneous bacteria populations Inproceedings

In: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, pp. 366–375, 2015.

Links | BibTeX | Tags: Biological Networks, Networks

8.

Lo, Chieh; Wei, Guopeng; Marculescu, Radu

Towards autonomous control of molecular communication in populations of bacteria Inproceedings

In: Proceedings of the Second Annual International Conference on Nanoscale Computing and Communication, pp. 1–6, 2015.

Links | BibTeX | Tags: Biological Networks, Networks

2014

7.

Bogdan, Paul; Deasy, Bridget M; Gharaibeh, Burhan; Roehrs, Timo; Marculescu, Radu

Heterogeneous structure of stem cells dynamics: statistical models and quantitative predictions Journal Article

In: Scientific reports, 4 , pp. 4826, 2014.

Links | BibTeX | Tags: Biological Networks, Networks

6.

Zhuang, Jiang; Wei, Guopeng; Carlsen, Rika Wright; Edwards, Matthew R; Marculescu, Radu; Bogdan, Paul; Sitti, Metin

Analytical modeling and experimental characterization of chemotaxis in serratia marcescens Journal Article

In: Physical Review E, 89 (5), pp. 52704, 2014.

Links | BibTeX | Tags: Biological Networks, Networks

5.

Wei, Guopeng; Marculescu, Radu

Don't Let History Repeat Itself: Optimal Multidrug Quorum Quenching of Pathogens Network Inproceedings

In: Proceedings of ACM The First Annual International Conference on Nanoscale Computing and Communication, pp. 1–9, 2014.

Links | BibTeX | Tags: Biological Networks, Networks

4.

Wei, Guopeng; Marculescu, Radu

Miniature devices in the wild: Modeling molecular communication in complex extracellular spaces Journal Article

In: IEEE Journal on Selected Areas in Communications, 32 (12), pp. 2344–2353, 2014.

Links | BibTeX | Tags: Biological Networks, Networks

2013

3.

Wei, Guopeng; Bogdan, Paul; Marculescu, Radu

Bumpy rides: Modeling the dynamics of chemotactic interacting bacteria Journal Article

In: IEEE Journal on Selected Areas in Communications, 31 (12), pp. 879–890, 2013.

Links | BibTeX | Tags: Biological Networks, Networks

2.

Wei, Guopeng; Bogdan, Paul; Marculescu, Radu

Efficient modeling and simulation of bacteria-based nanonetworks with BNSim Journal Article

In: IEEE Journal on Selected Areas in Communications, 31 (12), pp. 868–878, 2013.

Links | BibTeX | Tags: Biological Networks, BNSim, Networks

2012

1.

Bogdan, Paul; Wei, Guopeng; Marculescu, Radu

Modeling populations of micro-robots for biological applications Inproceedings

In: 2012 IEEE International Conference on Communications (ICC), pp. 6188–6192, IEEE 2012.

Links | BibTeX | Tags: Biological Networks, Networks