2019
MetaNN: accurate classification of host phenotypes from metagenomic data using neural networks Journal Article
In: Bmc Bioinformatics, vol. 20, no. 12, pp. 314, 2019.
2018
PGLasso: Microbial Community Detection through Phylogenetic Graphical Lasso Journal Article
In: arXiv preprint arXiv:1807.08039, 2018.
2017
Towards cell-based therapeutics: A bio-inspired autonomous drug delivery system Journal Article
In: Nano communication networks, vol. 12, pp. 25–33, 2017.
Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated serratia marcescens Journal Article
In: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 473, no. 2203, pp. 20170154, 2017.
Inferring microbial interactions from metagenomic time-series using prior biological knowledge Proceedings Article
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, pp. 168–177, 2017.
Molecular communication with DNA cellular storage system Proceedings Article
In: Proceedings of the 4th ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2017.
MPLasso: Inferring microbial association networks using prior microbial knowledge Journal Article
In: PLoS computational biology, vol. 13, no. 12, pp. e1005915, 2017.
2016
Autonomous and adaptive control of populations of bacteria through environment regulation Proceedings Article
In: International Conference on Computational Methods in Systems Biology, pp. 168–185, Springer, Cham 2016.
An autonomous and adaptive bacteria-based drug delivery system Proceedings Article
In: Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, pp. 1–6, 2016.
In Silico Evaluation of the Impacts of Quorum Sensing Inhibition (QSI) on strain competition and development of QSI resistance Journal Article
In: Scientific reports, vol. 6, pp. 35136, 2016.
2015
Molecular tweeting: unveiling the social network behind heterogeneous bacteria populations Proceedings Article
In: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, pp. 366–375, 2015.
Towards autonomous control of molecular communication in populations of bacteria Proceedings Article
In: Proceedings of the Second Annual International Conference on Nanoscale Computing and Communication, pp. 1–6, 2015.
2014
Heterogeneous structure of stem cells dynamics: statistical models and quantitative predictions Journal Article
In: Scientific reports, vol. 4, pp. 4826, 2014.
Analytical modeling and experimental characterization of chemotaxis in serratia marcescens Journal Article
In: Physical Review E, vol. 89, no. 5, pp. 52704, 2014.
Don't Let History Repeat Itself: Optimal Multidrug Quorum Quenching of Pathogens Network Proceedings Article
In: Proceedings of ACM The First Annual International Conference on Nanoscale Computing and Communication, pp. 1–9, 2014.
Miniature devices in the wild: Modeling molecular communication in complex extracellular spaces Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 32, no. 12, pp. 2344–2353, 2014.
2013
Bumpy rides: Modeling the dynamics of chemotactic interacting bacteria Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 31, no. 12, pp. 879–890, 2013.
Efficient modeling and simulation of bacteria-based nanonetworks with BNSim Journal Article
In: IEEE Journal on Selected Areas in Communications, vol. 31, no. 12, pp. 868–878, 2013.
2012
Modeling populations of micro-robots for biological applications Proceedings Article
In: 2012 IEEE International Conference on Communications (ICC), pp. 6188–6192, IEEE 2012.